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Publications

  • Blanco-Fuertes M, González-Comino G, Brotons-de los Reyes P, Lluansí A, Varo R, Henares-Bonilla D, Launes-Montana C, Cisneros M, Fernández de Sevilla-Estrach M, García-García JJ, Mira A, Bassat Q and Munoz-Almagro C.

    Oral microbiota composition in children and adults during Spanish COVID-19 lockdown: impact of home self-confinement and SARS-CoV-2 infection.

    Journal of Oral Microbiology . 18(1): 2635242-2635242.

    [doi:10.1080/20002297.2026.2635242]

  • Dietl B, Henares-Bonilla D, Cuchí E, Blanco-Fuertes M, Rajadell M, Brotons-de los Reyes P, Lluansí A, Boix-Palop L, Calbo E and Munoz-Almagro C.

    Differential nasopharyngeal microbiota patterns: A comparative study of pneumococcal pneumonia, COVID-19, and healthy adults

    JOURNAL OF INFECTION . 91(3): 106589-106589.

    [doi:10.1016/j.jinf.2025.106589]

  • Lluansí A, Brotons-de los Reyes P, Díaz-Silva M, Rigalos A, García-Beltran C, Pérez-Argüello A, Cisneros M, Blanco-Fuertes M, Henares-Bonilla D, Ibañez-Toda L and Munoz-Almagro C.

    Early development and dynamics of nasopharyngeal microbiota in infants during the COVID-19 pandemic: a 2-year prospective birth cohort study

    Respiratory Research . 26(1): 240-240.

    [doi:10.1186/s12931-025-03307-5]

  • Cisneros M, Blanco-Fuertes M, Lluansí A, Brotons-de los Reyes P, Henares-Bonilla D, Pérez-Argüello A, González-Comino G, Ciruela Navas P, Mira A and Munoz-Almagro C.

    Synergistic inhibition of pneumococcal growth by Dolosigranulum pigrum and Corynebacterium pseudodiphtheriticum: insights into nasopharyngeal microbial interactions

    Microbiology Spectrum . 13(7): . Number of citations: 2

    [doi:10.1128/spectrum.00138-25]

  • Henares-Bonilla D, Cubero M, Irene Martínez de Albéniz, Arranz A, Rocafort-Junca M, Brotons-de los Reyes P, Pérez-Argüello A, Troyano MJ, Gene-Giralt A, Lluansí A, Iriondo-Sanz M, Jordán-García I, Fortuny-Guasch C, Urrea M and Munoz-Almagro C.

    Rapid identification of a Serratia marcescens outbreak in a neonatal intensive care unit by third-generation long-read nanopore sequencing

    Antimicrobial Resistance and Infection Control . 14(1): 63-63. Number of citations: 5

    [doi:10.1186/s13756-025-01582-x]

  • Shaw D, Torreblanca RA, Amin-Chowdhury Z, Bautista A, Bennett D, Broughton K, Casanova C, Choi EH, Claus H, Corcoran M, Cottrell S, Cunney R, Cuypers L, Dalby T, Davies H, de Gouveia L, Deghmane AE, Desmet S, Domenech M, Drew R, Plessis MD, Duarte C, Fuursted K, Golden A, Almeida SCG, Henares-Bonilla D, Henriques-Normark B, Hilty M, Hoffmann S, Humphreys H, Jacobsson S, Johnson C, Jolley KA, Kawabata A, Kozakova J, Kristinsson KG, Krizova P, Kuch A, Ladhani S, Lâm TT, Ayala MEL, Lindholm L, Litt D, Maiden MCJ, Martin I, Martiny D, Mattheus W, McCarthy ND, Meehan M, Meiring S, Mölling P, Morfeldt E, Morgan J, Mulhall R, Munoz-Almagro C, Murdoch D, Musilek M, Novakova L, Oftadeh S, Pérez-Argüello A, Pérez-Vázquez MD, Perrin M, Prevost B, Roberts M, Rokney A, Ron M, Sanabria OM, Scott KJ, Sempere J, Siira L, de Lemos APS, Sintchenko V, Skoczynska A, Slotved HC, Smith AJ, Taha MK, Toropainen M, Tzanakaki G, Vainio A, van der Linden MPG, van Sorge NM, Varon E, Moreno JV, Vohrnova S, von Gottberg A, Yuste J and Brueggemann AB.

    The importance of microbiology reference laboratories and adequate funding for infectious disease surveillance

    Lancet Digital Health . 7(4): 275-281. Number of citations: 11

    [doi:10.1016/S2589-7500(24)00241-3]

  • Brotons-de los Reyes P, Cisneros M, Pérez-Argüello A, Henares-Bonilla D, Lluansí A, Fernández de Sevilla-Estrach M, Ciruela P, Blanco-Fuertes M, Launes-Montana C, Jordán-García I, Bassat Q, García-García JJ and Munoz-Almagro C.

    Pneumococcal nasopharyngeal carriage in children and adults self-confined at home during a COVID-19 national lockdown

    PLoS One . 19(12): . Number of citations: 1

    [doi:10.1371/journal.pone.0315081]

  • Henares-Bonilla D, Monsalvez V, Brotons-de los Reyes P, Machado ML, Capilla S, Gomila-Grange A, Bierge P, Cubero M, Q Pich O, Requena-Méndez A, Munoz-Almagro C and Gasch O.

    Human gut microbiota composition associated with international travels

    Travel Medicine and Infectious Disease . 61: 102747-102747. Number of citations: 5

    [doi:10.1016/j.tmaid.2024.102747]

  • Belman S, Lefrancq N, Nzenze S, Downs S, du Plessis M, Lo SW, McGee L, Madhi SA, von Gottberg A, Bentley SD and Salje H.

    Geographical migration and fitness dynamics of Streptococcus pneumoniae

    NATURE . 631(8020): 386-392. Number of citations: 22

    [doi:10.1038/s41586-024-07626-3]

  • Henares-Bonilla D, Lo, SW, Perez-Argüello, A, Redin, A, Ciruela Navas P, García-García JJ, Brotons-de los Reyes P, Yuste, J, Sá-Leao, R and Munoz-Almagro C.

    Comparison of next generation technologies and bioinformatics pipelines for capsular typing of Streptococcus pneumoniae

    JOURNAL OF CLINICAL MICROBIOLOGY . 61(12): . Number of citations: 11

    [doi:10.1128/jcm.00741-23]